Figure 9.

Results for the C-to-U conversion data – scaled permutation importance. Scaled variable importance measures for the C-to-U conversion data. The plots in the top row display the measures when the randomForest function is used, the bottom row when the cforest function is used. The left column corresponds to bootstrap sampling with replacement, the right column to subsampling without replacement. In each plot the positions -20 through 20 indicate the nucleotides flanking the site of interest, and the last three bars on the right refer to the codon position (cp), the estimated folding energy (fe) and the difference in estimated folding energy (dfe).