|
Validated orphan activities |
|||||
| EC No. |
Ranking |
EC No. |
Ranking |
EC No. |
Ranking |
|
|
|||||
| 1.1.1.13 |
difficult |
1.14.99.24 |
difficult |
3.1.3.47 |
good |
| 1.1.1.16 |
difficult |
1.21.3.2 |
difficult |
3.1.3.59 |
difficult |
| 1.1.1.43 |
difficult |
1.97.1.3 |
difficult |
3.1.3.72 |
difficult |
| 1.1.1.54 |
difficult |
2.1.1.112 |
difficult |
3.1.4.43 |
difficult |
| 1.1.1.84 |
excellent |
2.1.1.137 |
artifact |
3.1.6.17 |
good |
| 1.1.1.92 |
marginal |
2.1.1.141 |
artifact |
3.1.8.2 |
artifact |
| 1.1.1.101 |
difficult |
2.1.1.143 |
artifact |
3.2.1.56 |
difficult |
| 1.1.1.144 |
difficult |
2.1.1.147 |
difficult |
3.2.1.77 |
difficult |
| 1.1.1.146 |
artifact |
2.1.1.84 |
difficult |
3.2.1.100 |
good |
| 1.1.1.163 |
artifact |
2.1.1.99 |
difficult |
3.2.1.112 |
excellent |
| 1.1.1.172 |
good |
2.1.2.4 |
difficult |
3.2.1.115 |
difficult |
| 1.1.1.196 |
good |
2.3.1.14 |
difficult |
3.2.1.128 |
excellent |
| 1.1.1.208 |
poor |
2.3.1.23 |
difficult |
3.2.1.136 |
difficult |
| 1.1.1.226 |
excellent |
2.3.1.24 |
artifact |
3.2.1.137 |
poor |
| 1.1.1.245 |
artifact |
2.3.1.33 |
difficult |
3.2.2.10 |
difficult |
| 1.1.1.258 |
artifact |
2.3.1.49 |
difficult |
3.4.11.16 |
good |
| 1.1.1.265 |
excellent |
2.3.1.68 |
marginal |
3.4.13.7 |
difficult |
| 1.1.2.5 |
artifact |
2.3.1.96 |
difficult |
3.4.17.16 |
good |
| 1.1.3.23 |
difficult |
2.3.1.98 |
good |
3.4.21.103 |
artifact |
| 1.17.1.1 |
difficult |
2.3.1.102 |
artifact |
3.4.22.44 |
artifact |
| 1.17.99.2 |
artifact |
2.3.1.103 |
poor |
3.4.22.46 |
artifact |
| 1.2.1.18 |
artifact |
2.3.1.105 |
poor |
3.4.23.28 |
difficult |
| 1.2.1.20 |
difficult |
2.3.1.114 |
poor |
3.4.23.30 |
artifact |
| 1.2.1.23 |
poor |
2.3.1.133 |
marginal |
3.4.24.54 |
artifact |
| 1.2.1.25 |
difficult |
2.3.1.140 |
difficult |
3.5.1.30 |
good |
| 1.2.1.32 |
artifact |
2.3.1.161 |
artifact |
3.5.1.33 |
artifact |
| 1.2.1.33 |
difficult |
2.3.2.3 |
artifact |
3.5.1.39 |
poor |
| 1.2.1.52 |
difficult |
2.3.2.7 |
difficult |
3.5.1.58 |
excellent |
| 1.2.1.54 |
good |
2.3.3.3 |
difficult |
3.5.1.62 |
artifact |
| 1.2.1.63 |
marginal |
2.4.1.23 |
poor |
3.5.1.67 |
difficult |
| 1.2.1.64 |
artifact |
2.4.1.29 |
difficult |
3.5.1.71 |
poor |
| 1.2.3.6 |
difficult |
2.4.1.41 |
valid |
3.5.1.79 |
artifact |
| 1.2.3.7 |
poor |
2.4.1.43 |
difficult |
3.5.2.13 |
poor |
| 1.2.3.8 |
artifact |
2.4.1.57 |
artifact |
3.5.2.16 |
artifact |
| 1.3.1.4 |
difficult |
2.4.1.66 |
artifact |
3.5.3.2 |
good |
| 1.3.1.5 |
difficult |
2.4.1.73 |
artifact |
3.5.5.2 |
difficult |
| 1.3.1.6 |
artifact |
2.4.1.97 |
difficult |
3.6.1.18 |
excellent |
| 1.3.1.11 |
difficult |
2.4.1.110 |
poor |
3.6.1.2 |
artifact |
| 1.3.1.37 |
difficult |
2.4.1.125 |
difficult |
3.6.1.52 |
artifact |
| 1.3.7.1 |
difficult |
2.4.1.126 |
valid |
3.6.3.17 |
artifact |
| 1.3.99.15 |
artifact |
2.4.1.153 |
poor |
3.6.3.24 |
artifact |
| 1.3.99.21 |
artifact |
2.4.1.167 |
difficult |
3.6.3.28 |
artifact |
| 1.4.1.11 |
good |
2.4.1.176 |
difficult |
3.6.4.4 |
artifact |
| 1.4.1.17 |
good |
2.4.1.180 |
excellent |
4.1.1.24 |
difficult |
| 1.4.99.4 |
marginal |
2.4.1.184 |
difficult |
4.1.1.52 |
difficult |
| 1.4.99.5 |
artifact |
2.4.1.215 |
artifact |
4.1.1.56 |
difficult |
| 1.5.1.21 |
good |
2.4.2.35 |
difficult |
4.1.1.75 |
difficult |
| 1.5.99.11 |
artifact |
2.5.1.4 |
difficult |
4.1.2.23 |
difficult |
| 1.6.5.7 |
artifact |
2.5.1.42 |
difficult |
4.1.2.28 |
difficult |
| 1.7.3.1 |
difficult |
2.6.1.22 |
difficult |
4.1.2.35 |
difficult |
| 1.7.3.5 |
valid |
2.6.1.27 |
poor |
4.1.3.35 |
difficult |
| 1.8.1.5 |
artifact |
2.6.1.32 |
difficult |
4.2.1.5 |
difficult |
| 1.10.1.1 |
difficult |
2.6.1.33 |
poor |
4.2.1.43 |
good |
| 1.10.3.4 |
difficult |
2.6.1.75 |
good |
4.2.1.62 |
good |
| 1.12.98.2 |
artifact |
2.7.1.43 |
difficult |
4.2.1.77 |
difficult |
| 1.13.11.14 |
difficult |
2.7.1.54 |
difficult |
4.2.1.81 |
difficult |
| 1.13.11.24 |
artifact |
2.7.1.64 |
difficult |
4.2.1.93 |
difficult |
| 1.13.11.25 |
artifact |
2.7.1.77 |
difficult |
4.2.1.97 |
marginal |
| 1.13.11.35 |
difficult |
2.7.1.106 |
difficult |
4.2.1.101 |
artifact |
| 1.13.12.9 |
good |
2.7.1.131 |
poor |
4.2.2.14 |
artifact |
| 1.14.11.10 |
difficult |
2.7.1.134 |
difficult |
4.2.3.19 |
artifact |
| 1.14.11.6 |
poor |
2.7.1.142 |
difficult |
4.2.99.19 |
artifact |
| 1.14.13.10 |
marginal |
2.7.4.20 |
difficult |
4.3.1.10 |
difficult |
| 1.14.13.23 |
good |
2.7.7.44 |
difficult |
4.3.1.20 |
difficult |
| 1.14.13.24 |
artifact |
2.7.7.51 |
difficult |
4.5.1.4 |
difficult |
| 1.14.13.42 |
difficult |
2.7.8.10 |
difficult |
5.1.1.6 |
difficult |
| 1.14.13.51 |
difficult |
2.7.8.22 |
difficult |
5.1.1.9 |
marginal |
| 1.14.13.58 |
excellent |
2.8.1.3 |
excellent |
5.1.3.17 |
difficult |
| 1.14.13.60 |
difficult |
2.8.2.28 |
difficult |
5.2.1.10 |
difficult |
| 1.14.13.72 |
difficult |
3.1.1.36 |
difficult |
5.2.1.11 |
difficult |
| 1.14.13.73 |
artifact |
3.1.1.39 |
difficult |
5.4.3.5 |
artifact |
| 1.14.15.2 |
difficult |
3.1.1.40 |
poor |
5.5.1.11 |
good |
| 1.14.16.5 |
good |
3.1.1.78 |
artifact |
5.5.1.12 |
artifact |
| 1.14.99.18 |
artifact |
3.1.2.11 |
difficult |
5.5.1.3 |
difficult |
| 1.14.99.22 |
artifact |
3.1.3.14 |
difficult |
6.3.1.6 |
difficult |
| 3.1.3.38 |
poor |
6.3.4.8 |
difficult |
||
|
All 228 orphans reviewed in this study are listed. The salvageability of an orphan is ranked "difficult" when factors such as unclear species of origin, lack of molecular descriptors, or lack of comprehensive genome sequence hinder cloning of the cognate gene. Note that such rankings do not take into account the availability of molecular descriptors which enable the identification of a candidate gene in one species, and, through orthology, the identification of a candidate gene in a second species for which these descriptors are not available. | |||||
Pouliot and Karp BMC Bioinformatics 2007 8:244 doi:10.1186/1471-2105-8-244 |
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