Table 1

The prediction performances

Accuracy for interacting binding sites, also known as recall (%)

Accuracy for non-interacting binding sites (%)

Average accuracy (%)

Precision (%)


Mix1

87.4

68.6

78.0

73.6

Mix1 (sequence window)

88.7

63.3

76.0

70.8

Mix1 (putative binding sites)

87.3

67.6

77.4

72.9

Homo-dimers2

96.4

67.5

81.9

74.8

Hetero-dimers2

66.3

62.8

64.5

64.0


1 The mixed data set of homo-dimer and hetero-dimer interfaces.

2 The data set of homo-dimer and hetero-dimer interfaces were separately trained and tested.

The prediction was performed using the default input features (sequence profile with a surface patch size 3).

Chung et al. BMC Bioinformatics 2007 8:223   doi:10.1186/1471-2105-8-223

Open Data