Research article  

Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens

Daniel Nätt, Carl-Johan Rubin, Dominic Wright, Martin Johnsson, Johan Beltéky, Leif Andersson, Per Jensen BMC Genomics 2012, 13:59 (4 February 2012)

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Research article  

An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies

Michiel E Adriaens, Magali Jaillard, Lars MT Eijssen, Claus-Dieter Mayer, Chris TA Evelo BMC Genomics 2012, 13:42 (25 January 2012)

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Methodology article  

HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data

Erdogan Taskesen, Renee Beekman, Jeroen de Ridder, Bas J Wouters, Justine K Peeters, Ivo P Touw, Marcel JT Reinders, Ruud Delwel BMC Bioinformatics 2010, 11:275 (21 May 2010)

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Software  

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

Lihua J Zhu, Claude Gazin, Nathan D Lawson, Hervé Pagès, Simon M Lin, David S Lapointe, Michael R Green BMC Bioinformatics 2010, 11:237 (11 May 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Correction  

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts

Joern Toedling, Oleg Skylar, Tammo Krueger, Jenny J Fischer, Silke Sperling, Wolfgang Huber BMC Bioinformatics 2007, 8:443 (15 November 2007)

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