Proceedings  

Finding consistent disease subnetworks across microarray datasets

Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong BMC Bioinformatics 2011, 12(Suppl 13):S15 (30 November 2011)

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Technical Note  

gViz, a novel tool for the visualization of co-expression networks

Raphaël Helaers, Eric Bareke, Bertrand De Meulder, Michael Pierre, Sophie Depiereux, Naji Habra, Eric Depiereux BMC Research Notes 2011, 4:452 (27 October 2011)

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Software  

Biana: a software framework for compiling biological interactions and analyzing networks

Javier Garcia-Garcia, Emre Guney, Ramon Aragues, Joan Planas-Iglesias, Baldo Oliva BMC Bioinformatics 2010, 11:56 (27 January 2010)

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Software  

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

Martijn P van Iersel, Alexander R Pico, Thomas Kelder, Jianjiong Gao, Isaac Ho, Kristina Hanspers, Bruce R Conklin, Chris T Evelo BMC Bioinformatics 2010, 11:5 (4 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research  

Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite Eimeria

Dennis Prickett, Michael Watson BMC Proceedings 2009, 3(Suppl 4):S7 (16 July 2009)

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Research  

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

Jakob Hedegaard, Cristina Arce, Silvio Bicciato, Agnès Bonnet, Bart Buitenhuis, Melania Collado-Romero, Lene N Conley, Magali SanCristobal, Francesco Ferrari, Juan J Garrido, Martien AM Groenen, Henrik Hornshøj, Ina Hulsegge, Li Jiang, Ángeles Jiménez-Marín, Arun Kommadath, Sandrine Lagarrigue, Jack AM Leunissen, Laurence Liaubet, Pieter BT Neerincx et al. BMC Proceedings 2009, 3(Suppl 4):S5 (16 July 2009)

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Research article  

Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array

Xingyi Hang, Peiyao Li, Zhifeng Li, Wubin Qu, Ying Yu, Hualing Li, Zhiyong Shen, Hao Zheng, Yan Gao, Yonghong Wu, Minghua Deng, Zhixian Sun, Chenggang Zhang BMC Genomics 2009, 10:126 (25 March 2009)

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Research article  

Disturbances in metabolic, transport and structural genes in experimental colonic inflammation in the rat: a longitudinal genomic analysis

Olga Martínez-Augustin, Manel Merlos, Antonio Zarzuelo, María Suárez, Fermín de Medina BMC Genomics 2008, 9:490 (17 October 2008)

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Software  

Presenting and exploring biological pathways with PathVisio

Martijn P van Iersel, Thomas Kelder, Alexander R Pico, Kristina Hanspers, Susan Coort, Bruce R Conklin, Chris Evelo BMC Bioinformatics 2008, 9:399 (25 September 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central