|
BLAST scores of added reactions in S. cerevisiae |
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| Reactions |
E Value |
Reaction in S. cerevisiae |
Organism |
|
|
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| methionine γ-lyase |
1e-58,1e-68 |
Cystathionine gamma-lyase |
Pseudomonas putida |
| 2-hydroxyglutarate synthase(no gene identified yet) |
---------- |
--------------- |
E. coli |
| 2-oxoglutarate reductase/phosphoglycerate dehydrogenase |
2e-14, 3e-18 |
3-phosphoglycerate dehydrogenase |
Bacillus subtilis |
| deoxyribose-phosphate aldolase |
7.7, 0.006 |
Phosphatidylinositol 3-kinase TOR2 |
Mycoplasma pneumoniae |
| D-lactate dehydrogenase |
2, 3e-04 |
Protein of unknown function |
E. coli |
| L-tryptophan aminotransferase |
no information |
no information |
Enterobacter cloacae |
| Methylglyoxal synthase |
1.5, 0.001 |
carbamyl phosphate synthetase |
E. coli |
| phenylpyruvate decarboxylase |
3E-35, 1e-39 |
Chain A, Pyruvate Decarboyxlase |
Azoarcus sp. EbN1 |
| tagatose-1,6-bisphosphate aldolase 2 |
1e-12, 1e-16 |
Fructose 1,6-bisphosphate aldolase |
E. coli |
| tryptophan 2-monooxygenase |
2.2, 5e-05 |
orf:PZA105 |
E. coli |
| 5,10-methylenetetrahydrofolate reductase(present in the cytosol) |
1E-38, 2e-42 |
Isozyme of methylenetetrahydrofolate reductase |
E. coli |
| adenine phosphoribosyltransferase(present in cytosol) |
2E-25, 1e-29 |
Adenine phosphoribosyltransferase |
E. coli |
| guanylate kinase(present in cytosol) |
9E-38, 7e-42 |
Guanylate kinase |
E. coli |
| putative NAD+ kinase(present in cytosol) |
2E-27, 6e-28 |
ATP-NADH kinase |
E. coli |
| adenylate kinase(present in cytosol and mitochondria) |
7E-51, 5e-55 |
Adenylate kinase |
E. coli |
|
Candidate reactions from the MetaCyc database (along with BLAST scores) added to enable production of no-production metabolites in S. cerevisiae. | |||
Satish Kumar et al. BMC Bioinformatics 2007 8:212 doi:10.1186/1471-2105-8-212 |
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