Optimization based automated curation of metabolic reconstructions

BMC Bioinformatics
Volume 8

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Methodology article

Vinay Satish Kumar¹ , Madhukar S Dasika² and Costas D Maranas²

¹Department of Industrial and Manufacturing Engineering, The Pennsylvania State University, University Park, PA 16802, USA

²Department of Chemical Engineering, The Pennsylvania State University, University Park, PA 16802, USA

author email corresponding author email

BMC Bioinformatics 2007, 8:212doi:10.1186/1471-2105-8-212


Published:	20 June 2007

Additional file 1:

Testable hypotheses for E. coli. The abbreviations used are from the E. coli iJR904 model.

Format: XLS Size: 23KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Testable hypotheses for S. cerevisiae. The abbreviations used are from the S. cerevisiae iND750 model.

Format: XLS Size: 56KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

(GapFind). The (GapFind) formulation in the GAMS modeling language.

Format: GMS Size: 3KB Download file

Additional file 4:

(GapFill). The (GapFill) formulation in the GAMS modeling language.

Format: GMS Size: 2KB Download file