Optimization based automated curation of metabolic reconstructions
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* Corresponding author: Costas D Maranas costas@psu.edu
BMC Bioinformatics 2007, 8:212 doi:10.1186/1471-2105-8-212
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BioMed Central: 6 citations
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Research article
The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions Ottar Rolfsson, Bernhard Ø Palsson, Ines Thiele BMC Systems Biology 2011, 5:155 (1 October 2011) |
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Research article
Mohammad Alam, Eriko Takano, Rainer Breitling BMC Research Notes 2011, 4:325 (7 September 2011) |
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Research article
Caroline B Milne, James A Eddy, Ravali Raju, Soroush Ardekani, Pan-Jun Kim, Ryan S Senger, Yong-Su Jin, Hans P Blaschek, Nathan D Price BMC Systems Biology 2011, 5:130 (16 August 2011) |
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Methodology article
Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network Bevan Chung, Dong-Yup Lee BMC Systems Biology 2009, 3:117 (19 December 2009) |
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Methodology article
Inferring branching pathways in genome-scale metabolic networks Esa Pitkänen, Paula Jouhten, Juho Rousu BMC Systems Biology 2009, 3:103 (29 October 2009) ReTrace finds branching pathways in atom-level representations of genome-scale metabolic networks by considering combinations of the shortest linear pathways, scaling better than constraint-based modeling and avoiding shortfalls of graph-theoretic approaches.
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Research
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations Christopher S Henry, Jenifer F Zinner, Matthew P Cohoon, Rick L Stevens Genome Biology 2009, 10:R69 (25 June 2009) A new and validated genome-scale metabolic model of Bacillus subtilis 168, iBsu1103, is presented that has significantly improved completeness and accuracy. |