Table 2

Performances of the template-based 4-class solvent accessibility predictor (PaleAle_H) compared with a baseline predictor which copies the solvent accessibility of the best template (baseline) and with the ab initio solvent accessibility predictor (PaleAle).

maxID

baseline

PaleAle_H

PaleAle


95%

61.1%

64.8%

53.8%

30%

49.2%

57.1%

54.3%

20%

45.6%

55.5%

54.4%


Templates up to 95%, 30% and 20% maximum similarity allowed (maxID) for baseline and PaleAle_H. Performances measured only on residues for which a template has been identified. Results in 5-fold cross-validation on the S2171 set (see text for details).

Pollastri et al. BMC Bioinformatics 2007 8:201   doi:10.1186/1471-2105-8-201

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