Improved benchmarks for computational motif discovery

doi:10.1186/1471-2105-8-193

BMC Bioinformatics

Volume 8

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Research article

Improved benchmarks for computational motif discovery

Geir Kjetil Sandve¹ , Osman Abul² , Vegard Walseng¹ and Finn Drabløs³

¹Department of Computer and Information Science, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

²Department of Computer Engineering, TOBB University of Economics and Technology, Ankara, Turkey

³Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway

author email corresponding author email

BMC Bioinformatics 2007, 8:193doi:10.1186/1471-2105-8-193


Published:	8 June 2007

Additional files

Additional file 1:

Details on discrimination algorithm for IUPAC model. The file IUPAC_details.pdf describes the discrimination algorithm for IUPAC model in more detail, as well as several optimizations of computational efficiency.

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