Table 1

Complete list of motifs associated with effective antisense suppression

Motifs associated with effective antisense activity, sorted by length


2

3

4

5


CA

ACC

AACC

CCTC

AAACG

CATCG

CCGGG

CTCCC

GTCAC

CC

CAC

AACG

CGCC

AACCA

CATGT

CCGTG

CTCCG

GTCCC

CG

CCA

ACCA

CGCT

AACCC

CCAAC

CCTAC

CTCGT

GTGTC

CT

CCC

ACCC

CGTC

AACGA

CCACC

CCTCC

CTCTC

GTGTG

GC

CCG

ACCT

CGTG

ACCAT

CCACG

CCTGT

CTGTG

TACCA

TC

CCT

ACTC

CTCC

ACCCT

CCACT

CCTTG

GAACG

TACCC

CGC

AGCC

GCCA

ACCGG

CCATC

CGACC

GACCG

TCCAC

CGT

AGCT

GCCC

ACCTA

CCCAA

CGACG

GATAG

TCCCC

CTC

ATCG

GCGT

ACGAA

CCCAC

CGATG

GCAAG

TCCCG

GCC

CACC

GTCC

ACGCA

CCCAT

CGCAA

GCCAC

TCCCT

GCT

CACT

TACC

ACGCG

CCCCA

CGCCC

GCCTC

TCCGC

TCC

CATC

TCCC

ATACC

CCCCC

CGCCT

GCGAC

TCCGT

TGC

CCAC

TCCG

ATCCC

CCCGC

CGCGA

GCGCT

TCGTC

CCAT

TCGT

ATCGC

CCCTC

CGGTA

GCGTC

TCTCG

CCCA

TCTC

ATCTC

CCCTG

CGTAC

GCGTT

TGATA

CCCC

TGTC

CAACC

CCCTT

CGTCC

GCTAA

TGCGC

CCCG

TGTG

CAAGC

CCGAC

CGTGA

GGCCA

TGTGT

CCCT

TTGC

CACCA

CCGCC

CGTGC

GGCGT

TTGCG

CCGC

CACTC

CCGCG

CTACC

GGGCC

TTGGC

CATCC

CCGCT

CTCAG

GGTCC


McQuisten and Peek BMC Bioinformatics 2007 8:184   doi:10.1186/1471-2105-8-184

Open Data