BMC Bioinformatics

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The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

Ibtissem Grissa, Gilles Vergnaud and Christine Pourcel*

BMC Bioinformatics 2007, 8:172 doi:10.1186/1471-2105-8-172

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Research   Open Access

CRISPR loci reveal networks of gene exchange in archaea

Avital Brodt, Mor N Lurie-Weinberger, Uri Gophna Biology Direct 2011, 6:65 (21 December 2011)

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Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Kira S Makarova, L Aravind, Yuri I Wolf, Eugene V Koonin Biology Direct 2011, 6:38 (14 July 2011)

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Small variable segments constitute a major type of diversity of bacterial genomes at the species level

Fabrice Touzain, Erick Denamur, Claudine Médigue, Valérie Barbe, Meriem El Karoui, Marie-Agnès Petit Genome Biology 2010, 11:R45 (30 April 2010)

Comparison of all available genomes of three bacterial species suggests that a large part of genome diversity is contributed by short regions.

Research article   Open Access

Legionella pneumophila pangenome reveals strain-specific virulence factors

Giuseppe D'Auria, Nuria Jiménez-Hernández, Francesc Peris-Bondia, Andrés Moya, Amparo Latorre BMC Genomics 2010, 11:181 (17 March 2010)

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Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content

Fumito Maruyama, Mitsuhiko Kobata, Ken Kurokawa, Keishin Nishida, Atsuo Sakurai, Kazuhiko Nakano, Ryota Nomura, Shigetada Kawabata, Takashi Ooshima, Kenta Nakai, Masahira Hattori, Shigeyuki Hamada, Ichiro Nakagawa BMC Genomics 2009, 10:358 (5 August 2009)

Research article   Open Access

Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes

Josephine F Reyes, Andrew R Francis, Mark M Tanaka BMC Bioinformatics 2008, 9:496 (27 November 2008)