Comparing segmentations by applying randomization techniques

Niina Haiminen¹ , Heikki Mannila¹^,2 and Evimaria Terzi¹

¹HIIT Basic Research Unit, Department of Computer Science, P.O.Box 68, FI-00014 University of Helsinki, Finland

²Laboratory of Computer and Information Science, Helsinki University of Technology, FI-02015 TKK, Finland

author email corresponding author email

BMC Bioinformatics 2007, 8:171doi:10.1186/1471-2105-8-171


Published:	23 May 2007

Additional files

Additional file 1:

Randomization results for chromosome 1 isochore segmentations. Randomization results for the isochore structure from [7] for a 100 Mb region of chromosome 1 with 1305 segments.

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Additional file 2:

Randomization results for MHC isochore segmentations. Randomization results for the MHC region in chromosome 6 are shown w.r.t. three alternative ground truth segmentations T from [14,20,23].

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