Research article
A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana
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* Corresponding author: Mihaela Pertea mpertea@umiacs.umd.edu
1 Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
2 Dept. of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA
BMC Bioinformatics 2007, 8:159 doi:10.1186/1471-2105-8-159
Published: 21 May 2007Additional files
Additional file 1:
Hexamer motifs predicted as ESEs at the 5' (column 2) and 3' (column3) ends of internal exons from the ESEAra data set. Significance of the motif representation in the data (p-value) as computed by ELPH is shown for each predicted ESE, as well as an estimation of how larger is the frequency of selecting the motif in test vs. control sequences (mean rank), for 1000 sampling steps.
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