BMC Bioinformatics

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Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli

Gunnar Schramm, Marc Zapatka, Roland Eils* and Rainer König

BMC Bioinformatics 2007, 8:149 doi:10.1186/1471-2105-8-149

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Research article   Open Access Highly Accessed

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

Shihui Yang, Timothy J Tschaplinski, Nancy L Engle, Sue L Carroll, Stanton L Martin, Brian H Davison, Anthony V Palumbo, Miguel Rodriguez, Steven D Brown BMC Genomics 2009, 10:34 (20 January 2009)

Methodology article   Open Access

Machine learning based analyses on metabolic networks supports high-throughput knockout screens

Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König BMC Systems Biology 2008, 2:67 (24 July 2008)