BMC Bioinformatics

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Pre-processing Agilent microarray data

Marianna Zahurak*, Giovanni Parmigiani, Wayne Yu, Robert B Scharpf, David Berman, Edward Schaeffer, Shabana Shabbeer and Leslie Cope

BMC Bioinformatics 2007, 8:142 doi:10.1186/1471-2105-8-142

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Research article   Open Access

Genome-wide differential gene expression in immortalized DF-1 chicken embryo fibroblast cell line

Byung-Whi Kong, Jeong Yoon Lee, Walter G Bottje, Kentu Lassiter, Jonghyuk Lee, Douglas N Foster BMC Genomics 2011, 12:571 (23 November 2011)

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Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Koji Kadota, Kentaro Shimizu BMC Bioinformatics 2011, 12:227 (6 June 2011)

Proceedings   Open Access

Site-specific impacts on gene expression and behavior in fathead minnows (Pimephales promelas) exposed in situ to streams adjacent to sewage treatment plants

Natàlia Garcia-Reyero, Ira R Adelman, Dalma Martinović, Li Liu, Nancy D Denslow BMC Bioinformatics 2009, 10(Suppl 11):S11 (8 October 2009)

Research article   Open Access

New insights into molecular pathways associated with flatfish ovarian development and atresia revealed by transcriptional analysis

Angèle Tingaud-Sequeira, François Chauvigné, Juanjo Lozano, María J Agulleiro, Esther Asensio, Joan Cerdà BMC Genomics 2009, 10:434 (15 September 2009)

Research article   Open Access

The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations

Xue Lin, Bahman Afsari, Luigi Marchionni, Leslie Cope, Giovanni Parmigiani, Daniel Naiman, Donald Geman BMC Bioinformatics 2009, 10:256 (20 August 2009)

Research article   Open Access

Gene expression responses in male fathead minnows exposed to binary mixtures of an estrogen and antiestrogen

Natàlia Garcia-Reyero, Kevin J Kroll, Li Liu, Edward F Orlando, Karen H Watanabe, María S Sepúlveda, Daniel L Villeneuve, Edward J Perkins, Gerald T Ankley, Nancy D Denslow BMC Genomics 2009, 10:308 (13 July 2009)

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Novel insights into the unfolded protein response using Pichia pastoris specific DNA microarrays

Alexandra Graf, Brigitte Gasser, Martin Dragosits, Michael Sauer, Germán G Leparc, Thomas Tüchler, David P Kreil, Diethard Mattanovich BMC Genomics 2008, 9:390 (19 August 2008)

Methodology article   Open Access Highly Accessed

Extended analysis of benchmark datasets for Agilent two-color microarrays

Kathleen F Kerr BMC Bioinformatics 2007, 8:371 (3 October 2007)