BMC Bioinformatics

official impact factor 3.03

Open Access

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation

Rob Jelier*, Guido Jenster, Lambert CJ Dorssers, Bas J Wouters, Peter JM Hendriksen, Barend Mons, Ruud Delwel and Jan A Kors

BMC Bioinformatics 2007, 8:14 doi:10.1186/1471-2105-8-14

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Research article   Open Access

Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model

Xin He, Moushumi Sarma, Xu Ling, Brant Chee, Chengxiang Zhai, Bruce Schatz BMC Bioinformatics 2010, 11:272 (20 May 2010)

Methodology article   Open Access Highly Accessed

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

Rob Jelier, Peter AC 't Hoen, Ellen Sterrenburg, Johan T den Dunnen, Gert-Jan B van Ommen, Jan A Kors, Barend Mons BMC Bioinformatics 2008, 9:291 (24 June 2008)

Software   Open Access Highly Accessed

Anni 2.0: a multipurpose text-mining tool for the life sciences

Rob Jelier, Martijn J Schuemie, Antoine Veldhoven, Lambert CJ Dorssers, Guido Jenster, Jan A Kors Genome Biology 2008, 9:R96 (12 June 2008)

Anni 2.0 provides an ontology-based interface to MEDLINE.

Software   Open Access Highly Accessed

Calling on a million minds for community annotation in WikiProteins

Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert-Jan van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch Genome Biology 2008, 9:R89 (28 May 2008)

WikiProteins is a novel tool that allows community annotation in an open access, wiki-based system.