TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays

doi:10.1186/1471-2105-8-128

BMC Bioinformatics
Volume 8

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TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays

Chulyun Kim¹^,6 , Sangkyum Kim¹ , Russell Dorer³ , Dan Xie² , Jiawei Han¹ and Sheng Zhong¹^,2^,4^,5

¹Department Computer Science, University of Illinois at Urbana Champaign, Urbana, IL, USA

²Department of Bioengineering, University of Illinois at Urbana Champaign, Urbana, IL, USA

³Department of Pathology, Virginia Mason Medical Center, 1100 Ninth Avenue, Seattle, WA, USA

⁴Department of Statistics, University of Illinois at Urbana Champaign, Champaign, IL, USA

⁵Institute for Genomic Biology, University of Illinois at Urbana Champaign, Urbana, IL, USA

⁶School of Electrical Engineering and Computer Science, Seoul National University, South Korea

author email corresponding author email

BMC Bioinformatics 2007, 8:128doi:10.1186/1471-2105-8-128


Published:	18 April 2007

Additional files

Additional file 1:

A generic gene-deletion cassette module. Supplementary figure 1

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Additional file 2:

Summary of previous methods. Supplementary document

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Additional file 3:

Screenshot of the preprocessor module. Supplementary figure 2

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Additional file 4:

Screenshot of the computation module. Supplementary figure 3

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Additional file 5:

An example text output from TagSmart server. Supplementary figure 4

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Additional file 6:

Summary of the Cincreasin dataset. Supplementary table 1

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Additional file 7:

Summary of test results by colonial assays. Supplementary table 2

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Additional file 8:

Fold changes of the top 10 mutants sensitive to Cincreasin treatment. Supplementary figure 5

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Additional file 9:

Colonial assays for testing S.cerevisiae mutants in the presence of DMSO (control) and Cincreasin (treatment). Supplementary figure 6

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