Table 2

The p-value distribution of sequence pairs in some GO groups on transporter activity branch.
GO ID1
 p-values
 GO group description



[1, 10-2)
 [10-2, 10-5)
 [10-5, 10-10)
 [10-10, 10-20)
 [10-20, 10-50)
 [10-50, 10-100)
 [10-100, 0]
* GO0005215(392)
 94.13
 3.68
 0.66
 0.42
 0.52
 0.26
 0.33
 transporter activity
** GO0042626(43)
 85.6
 2.1
 2.21
 4.1
 2.21
 1.99
 1.77
 ATPase activity, coupled to transmembrane movement of substances
*** GO0042625(30)
 85.75
 1.84
 1.61
 3.68
 3.91
 2.07
 1.15
 ATPase activity, coupled to transmembrane movement of ions
**** GO0019829(19)
 92.4
 2.92
 0
 1.75
 1.75
 0
 1.17
 cation-transporting ATPase activity
***** GO0046961(18)
 92.16
 2.61
 0
 1.96
 1.96
 0
 1.31
 hydrogen-transporting ATPase activity, rotational mechanism
**** GO0015662(12)
 30.3
 0
 10.61
 19.7
 21.21
 13.64
 4.55
 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
**GO0015267(11)
 87.27
 3.64
 1.82
 0
 0
 1.82
 5.45
 channel or pore class transporter activity
*** GO0015268(9)
 88.89
 5.56
 2.78
 0
 0
 2.78
 0
 alpha-type channel activity
**** GO0005216(7)
 85.71
 4.76
 4.76
 0
 0
 4.76
 0
 ion channel activity
** GO0015238(14)
 41.76
 10.99
 15.38
 12.09
 10.99
 1.1
 7.69
 drug transporter activity
*** GO0015239(11)
 47.27
 9.09
 14.55
 9.09
 12.73
 0
 7.27
 multidrug transporter activity
** GO0015144(27)
 21.08
 1.71
 3.13
 8.55
 23.65
 5.7
 36.18
 carbohydrate transporter activity
*** GO0051119(24)
 0.36
 1.81
 3.62
 10.87
 30.07
 7.25
 46.01
 sugar transporter activity
**** GO0015145(17)
 0
 0
 0
 0
 0
 11.03
 88.97
 monosaccharide transporter activity
***** GO0015149(17)
 0
 0
 0
 0
 0
 11.03
 88.97
 hexose transporter activity
****** GO0005354(6)
 0
 0
 0
 0
 0
 33.33
 66.67
 galactose transporter activity
****** GO0015578(15)
 0
 0
 0
 0
 0
 0
 100
 mannose transporter activity
****** GO0005353(15)
 0
 0
 0
 0
 0
 0
 100
 fructose transporter activity
****** GO0005355(16)
 0
 0
 0
 0
 0
 0
 100
 glucose transporter activity
** GO0015075(140)
 95.6
 3.02
 0.16
 0.29
 0.37
 0.2
 0.36
 ion transporter activity
*** GO0046873(38)
 91.18
 4.98
 0.14
 0.28
 0.71
 1.28
 1.42
 metal ion transporter activity
**** GO0046915(29)
 88.67
 6.9
 0.25
 0.25
 0.49
 1.48
 1.97
 transition metal ion transporter activity
***** GO0005375(8)
 82.14
 10.71
 0
 3.57
 0
 3.57
 0
 copper ion transporter activity
***** GO0005381(10)
 75.56
 6.67
 0
 0
 0
 8.89
 8.89
 iron ion transporter activity
*** GO0042625(30)
 85.75
 1.84
 1.61
 3.68
 3.91
 2.07
 1.15
 ATPase activity, coupled to transmembrane movement of ions
**** GO0019829(19)
 92.4
 2.92
 0
 1.75
 1.75
 0
 1.17
 cation-transporting ATPase activity
***** GO0046961(18)
 92.16
 2.61
 0
 1.96
 1.96
 0
 1.31
 hydrogen-transporting ATPase activity, rotational mechanism
**** GO0015662(12)
 30.3
 0
 10.61
 19.7
 21.21
 13.64
 4.55
 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism

1The tree structure of the transporter activity branch is embedded in the first column of the table. The number of stars before a GO ID indicates the level of the GO group. If a group (A) is at one level higher than the group (B) on a row immediate above, A is a child of B. Otherwise, A is a sibling of the group that is at the same level as A and described on a nearest row above A. The numerical number in the parentheses after the GO ID represents the size of the group.

Duan et al. BMC Bioinformatics 2006 7(Suppl 4):S11   doi:10.1186/1471-2105-7-S4-S11