Table 3

Squared nearest neighbor deviation measured pixel by pixel. Comparison of variability in background estimates when a quantile and a morphological filter are used. The morphological filter γBδb is comparable to Spot's morph.close.open. The same parameter settings as in Table 1 have been used. The difference in s.n.n.d. between the quantile filter and the morphological filter is due to the block structure in the morphological filtered image.

Method

Slide 1

Slide 2

Slide 3

Slide 4

green

red

green

red

green

red

green

red


γB,{0.08}ζb,7

0.066

0.047

0.058

0.024

0.089

0.024

0.151

0.031

γBδb

1.211

0.344

1.059

0.181

2.139

0.196

4.002

0.327


Bengtsson and Bengtsson BMC Bioinformatics 2006 7:96   doi:10.1186/1471-2105-7-96

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