Table 1

SIMMAP summary statistics

Data Type

Statistic

Output*

Nucleotide

E [i → j]

1,2

E[transition]

1,2

E[transversion]

1,2

E[time]

1,2

E[subs/branch]

1

Codon

E[i → j]

1,2

E[synonymous]

1,2

E[non-synonymous]

1,2

E[time]

1,2

E[conservative]

1,2

E[radical]

1,2

E[AA_i → AA_j]

1,2

E[Δhydropathy]

1,2

Standard (Morphology)

E [i → j]

1,2

E[time]

1,2

E[bias]

1,2

E[rate]

1,2

* Statistics can be displayed on screen (1) or saved to a file (2). Values reported are the posterior expectations.

Bollback BMC Bioinformatics 2006 7:88   doi:10.1186/1471-2105-7-88