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BayGO: Bayesian analysis of ontology term enrichment in microarray data

Ricardo ZN Vêncio*, Tie Koide, Suely L Gomes and Carlos A de B Pereira

BMC Bioinformatics 2006, 7:86 doi:10.1186/1471-2105-7-86

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Methodology article   Open Access Highly Accessed

Markov Chain Ontology Analysis (MCOA)

H Frost, Alexa T McCray BMC Bioinformatics 2012, 13:23 (3 February 2012)

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Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base

Jiye Ai, Barry Smith, David T Wong BMC Bioinformatics 2010, 11:302 (3 June 2010)

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ProbCD: enrichment analysis accounting for categorization uncertainty

Ricardo ZN Vêncio, Ilya Shmulevich BMC Bioinformatics 2007, 8:383 (12 October 2007)

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GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M Carazo, Alberto Pascual-Montano Genome Biology 2007, 8:R3 (4 January 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

GENECODIS, a web-based tool for finding annotations that frequently co-occur in a set of genes and ranking them by their statistical significance, is presented.

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