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Document Types in Biozon. Each type is represented differently in Biozon's implementation. Each representation may be decomposed into a number of atomic units for the purpose of comparison. |
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| Document type |
Representation |
Atomic units |
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| protein sequence |
string |
amino acids |
| nucleic acid sequence |
string |
nucleic acids |
| protein family |
set |
proteins |
| pathway |
set |
protein families |
| domain |
ordered pair |
sequence coordinates |
| domain family |
set |
domains |
| interaction |
set |
proteins, nucleic acids |
| descriptor |
text |
characters |
| structure |
list |
3D coordinates |
| unigene cluster |
set |
nucleic acids (ESTs) |
Birkland and Yona BMC Bioinformatics 2006 7:70 doi:10.1186/1471-2105-7-70 |
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