Table 2

Examples of topic-GO associations

Topic #

GO ID

MI

GO Category

GO Term

Most Frequent Topic Words

278

GO:0005730

0.001439

Component

nucleolus

ribosom rrna pre deplet process small nucleolar biogenesi accumul nucleolu

267

GO:0005681

0.001193

Component

spliceosome complex

splice altern pre snrnp mrna spliceosom u2 step sap snrna

105

GO:0005816

0.00119

Component

spindle pole body

microtubul spindl mitot tubulin kinetochor mitosi centrosom pole centromer bodi

236

GO:0006935

0.00186

Process

chemotaxis

lymphocyt macrophag chemokin monocyt neutrophil inflammatori leukocyt peripher mcp cd8

156

GO:0006468

0.001514

Process

protein amino acid phosphorylation

kinas phosphoryl serin threonin pkc autophosphoryl casein akt catalyt ste20

267

GO:0000398

0.001404

Process

nuclear mRNA splicing

splice altern pre snrnp mrna spliceosom u2 step sap snrna

156

GO:0004674

0.001148

Function

protein serine/threonine kinase activity

kinas phosphoryl serin threonin pkc autophosphoryl casein akt catalyt ste20

267

GO:0008248

0.001463

Function

pre-mRNA splicing factor activity

splice altern pre snrnp mrna spliceosom u2 step sap snrna

236

GO:0008009

0.001093

Function

chemokine activity

lymphocyt macrophag chemokin monocyt neutrophil inflammatori leukocyt peripher mcp cd8

224

GO:0015671

5.05E-06

Process

oxygen transport

ha uniqu characterist featur extens character typic possess unusu exhibit

227

GO:0015213

5.00E-06

Function

uridine transporter activity

function defin unknown perform wide thei tissu repres consist creat

Zheng et al. BMC Bioinformatics 2006 7:58   doi:10.1186/1471-2105-7-58