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Identifying biological concepts from a protein-related corpus with a probabilistic topic model

Bin Zheng, David C McLean and Xinghua Lu*

BMC Bioinformatics 2006, 7:58 doi:10.1186/1471-2105-7-58

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Methodology article   Open Access Highly Accessed

Multi-label literature classification based on the Gene Ontology graph

Bo Jin, Brian Muller, Chengxiang Zhai, Xinghua Lu BMC Bioinformatics 2008, 9:525 (8 December 2008)

Abstract | Full text | PDF | PubMed

Research   Open Access

The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications

Inbal Halperin, Dariya S Glazer, Shirley Wu, Russ B Altman BMC Genomics 2008, 9(Suppl 2):S2 (16 September 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Method   Open Access

Novel metrics for evaluating the functional coherence of protein groups via protein semantic network

Bin Zheng, Xinghua Lu Genome Biology 2007, 8:R153 (31 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Metrics are presented for assessing overall functional coherence of a group of proteins based on the associated biomedical literature.

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