Proceedings  

THINK Back: KNowledge-based Interpretation of High Throughput data

Fernando Farfán, Jun Ma, Maureen A Sartor, George Michailidis, Hosagrahar V Jagadish BMC Bioinformatics 2012, 13(Suppl 2):S4 (13 March 2012)

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Research article  

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Koji Kadota, Kentaro Shimizu BMC Bioinformatics 2011, 12:227 (6 June 2011)

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Research article  

Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function

Petri Törönen, Pauli J Ojala, Pekka Marttinen, Liisa Holm BMC Bioinformatics 2009, 10:307 (23 September 2009)

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Research  

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Koji Kadota, Yuji Nakai, Kentaro Shimizu Algorithms for Molecular Biology 2009, 4:7 (22 April 2009)

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Methodology article  

Bayesian optimal discovery procedure for simultaneous significance testing

Jing Cao, Xian-Jin Xie, Song Zhang, Angelique Whitehurst, Michael A White BMC Bioinformatics 2009, 10:5 (6 January 2009)

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Research  

A weighted average difference method for detecting differentially expressed genes from microarray data

Koji Kadota, Yuji Nakai, Kentaro Shimizu Algorithms for Molecular Biology 2008, 3:8 (26 June 2008)

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Methodology article  

Empirical Bayes models for multiple probe type microarrays at the probe level

Magnus Åstrand, Petter Mostad, Mats Rudemo BMC Bioinformatics 2008, 9:156 (20 March 2008)

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Proceedings  

Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments

Hongya Zhao, Kwok-Leung Chan, Lee-Ming Cheng, Hong Yan BMC Bioinformatics 2008, 9(Suppl 1):S9 (13 February 2008)

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