Systematic assignment of thermodynamic constraints in metabolic network models
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* Corresponding author: Matthias Heinemann heinemann@imsb.biol.ethz.ch
BMC Bioinformatics 2006, 7:512 doi:10.1186/1471-2105-7-512
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BioMed Central: 10 citations
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Thermodynamically consistent model calibration in chemical kinetics Garrett Jenkinson, John Goutsias BMC Systems Biology 2011, 5:64 (6 May 2011) |
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Research
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations Christopher S Henry, Jenifer F Zinner, Matthew P Cohoon, Rick L Stevens Genome Biology 2009, 10:R69 (25 June 2009) A new and validated genome-scale metabolic model of Bacillus subtilis 168, iBsu1103, is presented that has significantly improved completeness and accuracy. |
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Incorporation of enzyme concentrations into FBA and identification of optimal metabolic pathways Rajat K De, Mouli Das, Subhasis Mukhopadhyay BMC Systems Biology 2008, 2:65 (18 July 2008) |
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Exhaustive identification of steady state cycles in large stoichiometric networks Jeremiah Wright, Andreas Wagner BMC Systems Biology 2008, 2:61 (11 July 2008) |
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Methodology article
Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo, Esko Ukkonen BMC Bioinformatics 2008, 9:266 (6 June 2008) Metabolic flux ratios can be quickly derived using a new framework that automatically analyses 13C tracer measurements by using metabolic network models, removing the need for tedious manual analysis.
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Software
anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data Nicola Zamboni, Anne Kümmel, Matthias Heinemann BMC Bioinformatics 2008, 9:199 (16 April 2008) |
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Methodology article
Francisco Llaneras, Jesús Picó BMC Bioinformatics 2007, 8:421 (30 October 2007) |
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Methodology article
Optimization based automated curation of metabolic reconstructions Vinay Satish Kumar, Madhukar S Dasika, Costas D Maranas BMC Bioinformatics 2007, 8:212 (20 June 2007) |
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Methodology article
Andreas Hoppe, Sabrina Hoffmann, Hermann-Georg Holzhütter BMC Systems Biology 2007, 1:23 (1 June 2007) |