Table 4 |
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|
A list of genes mapping to nine orphan tagsSummary of the nine orphan tags that have complete 17 basepairs (bps) in the tag region matched to gene equences in human. The input sequences for BLAST were 21 bp long including four bps of restriction site. The starting position of the first nucleotide of the LongSAGE tag is the fifth position of the input sequence. |
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|
LongSAGE Tag |
Start and end of matched location |
No. of matched basepairs |
Gene ID |
Description of the sequence matched to the tag |
|
|
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|
AAATATCCAGAATAGGC |
2-21 |
20 |
XM_378567.1 |
PREDICTED: Homo sapiens hypothetical LOC400505 (LOC400505), mRNA |
|
|
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|
CCAGCCGGGGTGACAGA |
5-21 |
17 |
NM_000791.3 |
Homo sapiens dihydrofolate reductase (DHFR), mRNA |
|
CCAGCCGGGGTGACAGA |
5-21 |
17 |
NM_001874.3 |
Homo sapiens carboxypeptidase M (CPM), transcript variant 1, mRNA |
|
CCAGCCGGGGTGACAGA |
5-21 |
17 |
NM_024080.3 |
Homo sapiens transient receptor potential cation channel, subfamily M, member 8 (TRPM8), mRNA |
|
|
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|
CCAGTCTGGGCAACAAG |
5-21 |
17 |
NM_017437.1 |
Homo sapiens cleavage and polyadenylation specific factor 2, 100kDa (CPSF2), mRNA |
|
CCAGTCTGGGCAACAAG |
5-21 |
17 |
NM_181776.1 |
Homo sapiens solute carrier family 36 (proton/amino acid symporter), member 2 (SLC36A2), mRNA |
|
|
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|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
NM_000641.2 |
Homo sapiens interleukin 11 (IL11), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
NM_000997.3 |
Homo sapiens ribosomal protein L37 (RPL37), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
NM_001009899.1 |
Homo sapiens KIAA2018 (KIAA2018), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
NM_001032999.1 |
Homo sapiens core-binding factor, runt domain, alpha subunit 2; translocated to, 2 (CBFA2T2), transcript variant 3, mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
NM_001033564.1 |
Homo sapiens hypothetical protein LOC619208 (LOC619208), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
NM_007042.1 |
Homo sapiens ribonuclease P 14kDa subunit (RPP14), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
NM_030579.1 |
Homo sapiens outer mitochondrial membrane cytochrome b5 (CYB5-M), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
XM_371492.2 |
PREDICTED: Homo sapiens similar to signal-transducing adaptor protein-2; brk kinase substrate (LOC388949), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
XM_379458.2 |
PREDICTED: Homo sapiens hypothetical LOC401287 (LOC401287), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
XM_499056.1 |
PREDICTED: Homo sapiens hypothetical gene supported by AK127523 (LOC441190), mRNA |
|
CCTGGCACTTTGGGAGG |
5-21 |
17 |
XM_499503.1 |
PREDICTED: Homo sapiens hypothetical gene supported by AK127523 (LOC442499), mRNA |
|
|
||||
|
GACTGGAGGTGTGGGGA |
4-21 |
18 |
NM_014636.1 |
Homo sapiens Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA |
|
|
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|
GGTGAGTGGGACCCAGG |
1-21 |
21 |
NM_012289.3 |
Homo sapiens kelch-like ECH-associated protein 1 (KEAP1), transcript variant 2, mRNA |
|
|
||||
|
GTGCTGGGATAACTGGC |
4-21 |
18 |
XM_499182.1 |
PREDICTED: Homo sapiens hypothetical gene supported by AK128305 (LOC441501), mRNA |
|
GTGCTGGGATAACTGGC |
5-21 |
17 |
NM_005431.1 |
Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 2 (XRCC2), mRNA |
|
GTGCTGGGATAACTGGC |
5-21 |
17 |
NM_016094.2 |
Homo sapiens COMM domain containing 2 (COMMD2), mRNA |
|
GTGCTGGGATAACTGGC |
5-21 |
17 |
XM_374973.1 |
PREDICTED: Homo sapiens similar to hypothetical protein (L1H 3 region) - human (LOC400025), mRNA |
|
|
||||
|
GTGGGTCCTCGGGTTGG |
1-21 |
21 |
NM_194286.2 |
Homo sapiens KIAA1853 protein (KIAA1853), mRNA |
|
|
||||
|
TGGTACACACCTGTAGT |
4-21 |
18 |
NM_001008528.1 |
Homo sapiens matrix-remodelling associated 7 (MXRA7), transcript variant 1, mRNA |
|
TGGTACACACCTGTAGT |
4-21 |
18 |
NM_152920.1 |
Homo sapiens egf-like module containing, mucin-like, hormone receptor-like 2 (EMR2), transcript variant 6, mRNA |
|
TGGTACACACCTGTAGT |
5-21 |
17 |
NM_014573.1 |
Homo sapiens hypothetical protein MAC30 (MAC30), mRNA |
|
|
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|
Li et al. BMC Bioinformatics 2006 7:504 doi:10.1186/1471-2105-7-504 |
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