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Predictive results obtained by using different similarity measures for GO term pairs |
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| Semantic similarity method |
Lord |
SimLP |
Exact Match |
|
|
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| Compartment |
MCC (Accuracy %) |
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|
|
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| PML BODY |
0.223 (31.6) |
0.253 (34.2) |
0.250 (31.6) |
| Nuclear Lamina |
0.579 (60.0) |
0.578 (63.6) |
0.578 (63.6) |
| Nuclear Splicing Speckles |
0.598 (66.1) |
0.607 (62.5) |
0.63 (62.5) |
| Chromatin |
0.511 (59.0) |
0.518 (60.7) |
0.509 (57.4) |
| Nucleoplasm |
0.411 (50.7) |
0.504 (56.0) |
0.483 (54.7) |
| Nucleolus |
0.615 (75.3) |
0.656 (79.0) |
0.642 (80.8) |
| Overall for Single-localization |
0.489 (63.7) |
0.519 (66.5) |
0.515(66.5) |
|
(Based on SUM_Match: The similarity of two proteins is defined as the sum of similarity scores over all matched GO term pairs.) | |||
Lei and Dai BMC Bioinformatics 2006 7:491 doi:10.1186/1471-2105-7-491 |
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