Table 4

An example of an ADF document.

Block Column

Block Row

Column

Row

Reporter ID

Reporter Sequence

Reporter Group

Control Type

CompositeElement ID


1

1

1

1

R1

ATGGTTGGTTACGTGT

experimental

PTEN

1

1

1

2

R2

CCGCGTTGCCCCGCC

experimental

PAX2

1

1

1

3

R3

CGTAGCTGATCGATGA

experimental

WWOX

1

1

1

4

R4

GGTTGGCTGAGATCGT

experimental

MAPK8

1

1

2

1

R1

ATGGTTGGTTACGTGT

experimental

PTEN

1

1

2

2

R2

CCGCGTTGCCCCGCC

experimental

PAX2

1

1

2

3

R3

CGTAGCTGATCGATGA

experimental

WWOX

1

1

2

4

R4

GGTTGGCTGAGATCGT

experimental

MAPK8

...

...

...

...

...

...

...

...

...

4

6

20

20

462020

TCCCTTCCGTTGTCCT

control

control_spike_calibration


Note how the information about Reporter and CompositeElement is duplicated to indicate the fact that every synthetic sequence is spotted more than once on the array.

Rayner et al. BMC Bioinformatics 2006 7:489   doi:10.1186/1471-2105-7-489

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