Figure 2.

Impact of the inflation parameter on MCL clustering results. (A) Impact of the inflation parameter on the clustering-wise Sensitivity (Sn), Positive Predictive Value (PPV) and geometric accuracy (Acc). Each curve represents the value of one evaluation statistics (ordinate) as a function of the inflation parameter (abscissa). Color code: blue : Sn; red : PPV; green : Acc; grey : geometrical accuracy for the first random control (randomized graph); orange : geometrical accuracy for the second random control (permuted clusters). (B) Number of complexes predicted as a function of the inflation factor for the original test graph. Color code: blue : test graph; red : random graph. (C) Sn, PPV and Acc scores obtained with a highly altered graph (A100,40). (D) Number of complexes predicted as a function of the inflation factor for A100,40.

Brohée and van Helden BMC Bioinformatics 2006 7:488   doi:10.1186/1471-2105-7-488
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