BMC Bioinformatics

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Using the nucleotide substitution rate matrix to detect horizontal gene transfer

Micah Hamady, M D Betterton and Rob Knight*

BMC Bioinformatics 2006, 7:476 doi:10.1186/1471-2105-7-476

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Comparison of methods for estimating the nucleotide substitution matrix

Maribeth Oscamou, Daniel McDonald, Von Bing Yap, Gavin A Huttley, Manuel E Lladser, Rob Knight BMC Bioinformatics 2008, 9:511 (1 December 2008)