BMC Bioinformatics

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GeneTools – application for functional annotation and statistical hypothesis testing

Vidar Beisvag*, Frode KR Jünge, Hallgeir Bergum, Lars Jølsum, Stian Lydersen, Clara-Cecilie Günther, Heri Ramampiaro, Mette Langaas, Arne K Sandvik and Astrid Lægreid

BMC Bioinformatics 2006, 7:470 doi:10.1186/1471-2105-7-470

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BioMed Central: 9 citations

Research article   Open Access

Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda

Joost J van Soest, Oliver W Stockhammer, Anita Ordas, Guido V Bloemberg, Herman P Spaink, Annemarie H Meijer BMC Immunology 2011, 12:58 (17 October 2011)

Methodology article   Open Access Highly Accessed

GO-based Functional Dissimilarity of Gene Sets

Norberto Díaz-Díaz, Jesús S Aguilar-Ruiz BMC Bioinformatics 2011, 12:360 (1 September 2011)

Research article   Open Access Highly Accessed

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

Eduard D Akhunov, Alina R Akhunova, Olin D Anderson, James A Anderson, Nancy Blake, Michael T Clegg, Devin Coleman-Derr, Emily J Conley, Curt C Crossman, Karin R Deal, Jorge Dubcovsky, Bikram S Gill, Yong Q Gu, Jakub Hadam, Hwayoung Heo, Naxin Huo, Gerard R Lazo, Ming-Cheng Luo, Yaqin Q Ma, David E Matthews, Patrick E McGuire, Peter L Morrell, Calvin O Qualset, James Renfro, Dindo Tabanao, Luther E Talbert, Chao Tian, Donna M Toleno, Marilyn L Warburton, Frank M You, Wenjun Zhang, Jan Dvorak et al. BMC Genomics 2010, 11:702 (14 December 2010)

Proceedings   Open Access

GOModeler- A tool for hypothesis-testing of functional genomics datasets

Prashanti Manda, McKinley G Freeman, Susan M Bridges, TJ Jankun-Kelly, Bindu Nanduri, Fiona M McCarthy, Shane C Burgess BMC Bioinformatics 2010, 11(Suppl 6):S29 (7 October 2010)

Software   Open Access

The High Throughput Sequence Annotation Service (HT-SAS) – the shortcut from sequence to true Medline words

Szymon Kaczanowski, Pawel Siedlecki, Piotr Zielenkiewicz BMC Bioinformatics 2009, 10:148 (16 May 2009)

Software   Open Access

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays

Bart HJ van den Berg, Jay H Konieczka, Fiona M McCarthy, Shane C Burgess BMC Bioinformatics 2009, 10:30 (23 January 2009)

Research article   Open Access Highly Accessed

ERK1 and ERK2 MAPK are key regulators of distinct gene sets in zebrafish embryogenesis

SF Gabby Krens, Maximiliano Corredor-Adámez, Shuning He, B Ewa Snaar-Jagalska, Herman P Spaink BMC Genomics 2008, 9:196 (28 April 2008)

The signalling proteins ERK1 and ERK2 target distinct sets of genes and play key roles during zebrafish embryogenesis, ERK1 in dorso-ventral patterning and cell migration, and ERK2 in cell migration, mesoderm differentiation and patterning.

Methodology article   Open Access

Optimization of cDNA microarrays procedures using criteria that do not rely on external standards

Torunn Bruland, Endre Anderssen, Berit Doseth, Hallgeir Bergum, Vidar Beisvag, Astrid Lægreid BMC Genomics 2007, 8:377 (18 October 2007)

Research   Open Access

Androgen-regulated genes differentially modulated by the androgen receptor coactivator L-dopa decarboxylase in human prostate cancer cells

Katia Margiotti, Latif A Wafa, Helen Cheng, Giuseppe Novelli, Colleen C Nelson, Paul S Rennie Molecular Cancer 2007, 6:38 (6 June 2007)