BMC Bioinformatics

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Evaluating different methods of microarray data normalization

André Fujita, João R Sato, Leonardo O Rodrigues, Carlos E Ferreira and Mari C Sogayar*

BMC Bioinformatics 2006, 7:469 doi:10.1186/1471-2105-7-469

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BioMed Central: 7 citations

Proceedings   Open Access

Fold change and p-value cutoffs significantly alter microarray interpretations

Mark R Dalman, Anthony Deeter, Gayathri Nimishakavi, Zhong-Hui Duan BMC Bioinformatics 2012, 13(Suppl 2):S11 (13 March 2012)

Research article   Open Access

Microarray analysis of peripheral blood lymphocytes from ALS patients and the SAFE detection of the KEGG ALS pathway

Jean-Luc C Mougeot, Zhen Li, Andrea E Price, Fred A Wright, Benjamin R Brooks BMC Medical Genomics 2011, 4:74 (25 October 2011)

Research article   Open Access Highly Accessed

Unveiling novel genes upregulated by both rhBMP2 and rhBMP7 during early osteoblastic transdifferentiation of C2C12 cells

Juan C Bustos-Valenzuela, Andre Fujita, Erik Halcsik, Jose M Granjeiro, Mari C Sogayar BMC Research Notes 2011, 4:370 (26 September 2011)

Thirteen new genes involved in osteoblast differentiation induced by bone morphogenetic proteins (BMPs) have been identified, which could improve our understanding on the molecular mechanisms underlying bone repair.

Methodology article   Open Access

Use of normalization methods for analysis of microarrays containing a high degree of gene effects

Terri T Ni, William J Lemon, Yu Shyr, Tao P Zhong BMC Bioinformatics 2008, 9:505 (28 November 2008)

Methodology article   Open Access Highly Accessed

Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data

Huiling Xiong, Dapeng Zhang, Christopher J Martyniuk, Vance L Trudeau, Xuhua Xia BMC Bioinformatics 2008, 9:25 (16 January 2008)

Software   Open Access Highly Accessed

GEDI: a user-friendly toolbox for analysis of large-scale gene expression data

André Fujita, João R Sato, Carlos E Ferreira, Mari C Sogayar BMC Bioinformatics 2007, 8:457 (19 November 2007)

Methodology article   Open Access

Optimization of cDNA microarrays procedures using criteria that do not rely on external standards

Torunn Bruland, Endre Anderssen, Berit Doseth, Hallgeir Bergum, Vidar Beisvag, Astrid Lægreid BMC Genomics 2007, 8:377 (18 October 2007)