Software
ProFAT: a web-based tool for the functional annotation of protein sequences
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* Corresponding author: Bianca Habermann habermann@mpi-cbg.de
1 Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, 01307 Dresden, Germany
2 Scionics Computer Innovation, GmbH, Tatzberg 47–51, 01307 Dresden, Germany
BMC Bioinformatics 2006, 7:466 doi:10.1186/1471-2105-7-466
Published: 23 October 2006Additional files
Additional File 1:
Table containing all keyword lists used within this study.
Format: PDF Size: 70KB Download file
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Additional File 2:
Detailed results of bulk searches using the Annotation Engine and HMMerThread for all members of the HNF-1α, PABP and PLAT superfamilies.
Format: XLS Size: 231KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 3:
Original ProFAT results for human protein Hook3, which was predicted as related to the CH domain family.
Format: PDF Size: 3.8MB Download file
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Additional File 4:
ProFAT results for KPL2, which was predicted as related to the CH domain family.
Format: PDF Size: 1.8MB Download file
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Additional File 5:
Original ProFAT results for EPS8L3 protein, resulting in the detection of a SAM domain in the C-terminus of the protein.
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Additional File 6:
Original ProFAT results for human protein PARN which has a weakly conserved RRM domain.
Format: PDF Size: 4.5MB Download file
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Additional File 7:
ProFAT result for human protein LOC84060, which is predicted to have a weakly conserved RRM domain.
Format: PDF Size: 3.3MB Download file
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Additional File 8:
Original ProFAT results for the human protein LOC79969, which has a predicted acetyltransferase domain.
Format: PDF Size: 1.3MB Download file
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Additional File 9:
Figure legends for Additional files 3 to 8.
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Additional File 10:
Table containing all accession numbers used for multiple sequence alignments in Figure 7. A detailed manual of the usage of the ProFAT web server containing screenshots of typical ProFAT results is available online [35].
Format: PDF Size: 41KB Download file
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