Table 2

Zero-one and Balanced error rates for the remote homology detection problem optimized for the balanced loss function.


sf95
 sf40


ZE
 BE
 ZE
 BE
MaxClassifier
14.7
 30.0
 21.0
 29.7
Direct K-way Classifiers
11.5
 23.1
 10.9
 13.0
Two-Level Approaches Without Hierarchy Information

Scaling
 9.3
 16.1
 10.9
 13.9
Ranking Perceptron
 Scale & Shift
 10.1
 19.5
 12.1
 15.8

Crammer Singer
 14.7
 28.9
 17.6
 24.1

Scaling
 9.0
 15.9
 11.8
 15.7
SVM-Struct
 Scale & Shift
 10.7
 19.9
 12.1
 15.1

Crammer Singer
 11.6
 19.4
 13.0
 16.3
Two-Level Approaches With Fold-level Nodes

Scaling
 11.2
 19.6
 14.7
 21.4
SVM-Struct
 Scale & Shift
 10.1
 19.3
 12.1
 16.9

Crammer Singer
 14.7
 26.0
 13.0
 18.2
Two-Level Approaches With Class-level and Fold-level Nodes

Scaling
 11.2
 20.2
 13.0
 18.8
SVM-Struct
 Scale & Shift
 13.5
 24.7
 12.1
 16.8

Crammer Singer
 14.7
 26.1
 13.0
 17.5

ZE and BE denote the zero-one error and balanced error percent rates respectively. The results were obtained by optimizing the balanced loss function.

Rangwala and Karypis BMC Bioinformatics 2006 7:455   doi:10.1186/1471-2105-7-455