Gene function classification using Bayesian models with hierarchy-based priors

doi:10.1186/1471-2105-7-448

BMC Bioinformatics

Volume 7

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Research article

Gene function classification using Bayesian models with hierarchy-based priors

Babak Shahbaba¹ and Radford M Neal²

¹Dept. of Public Health Sciences, Biostatistics, University of Toronto, Toronto, Ontario, Canada

²Dept. of Statistics and Dept. of Computer Science, University of Toronto, Toronto, Ontario, Canada

author email corresponding author email

BMC Bioinformatics 2006, 7:448doi:10.1186/1471-2105-7-448


Published:	12 October 2006

Additional files

Additional file 1:

Comparison of direct functional annotaion of several ORFs (whos function was unknown in 2001) with predicted functions using our corMNL model. For each ORF, we provide its Blattner number, predicted hierarchical class (based on the older hierarchy of E. coli), and the corresponding class labels in the first line. The subsequent lines (in italic format) show the recent annotation of each ORF based on direct experiment. Here, SE = "Some Evidence" and NE = "No Evidence".

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