Table 5 |
|
|
Times for all-against-all sequence comparisons of the ASTRAL SCOP PDB095 set. |
|
|
Method |
Time |
|
|
|
|
Paracel SW e-value |
3 hours * |
|
Biofacet SW Z-score |
multiple days |
|
NCBI BLAST e-value |
15 minutes |
|
FASTA e-value |
40 minutes |
|
SSEARCH e-value |
5 hours, 49 minutes |
|
ParAlign SW e-value |
47 minutes |
|
|
|
|
* estimation because of unavailability Paracel system |
|
|
Hulsen et al. BMC Bioinformatics 2006 7:444 doi:10.1186/1471-2105-7-444 |
|
