TreeDyn: towards dynamic graphics and annotations for analyses of trees
-
* Corresponding author: François Chevenet chevenet@ird.fr
BMC Bioinformatics 2006, 7:439 doi:10.1186/1471-2105-7-439
Accesses
- Last 30 days: 94 accesses
- Last 365 days: 1360 accesses
- All time: 10413 accesses
Cited by
BioMed Central: 22 citations
|
Research article
Leucine-Rich repeat receptor kinases are sporadically distributed in eukaryotic genomes Anne Diévart, Nicolas Gilbert, Gaétan Droc, Agnès Attard, Matthieu Gourgues, Emmanuel Guiderdoni, Christophe Périn BMC Evolutionary Biology 2011, 11:367 (20 December 2011) |
|
Research article
Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis Jaime I Davila, Maria P Arrieta-Montiel, Yashitola Wamboldt, Jun Cao, Joerg Hagmann, Vikas Shedge, Ying-Zhi Xu, Detlef Weigel, Sally A Mackenzie BMC Biology 2011, 9:64 (27 September 2011) |
|
Research
Mark G Lewis, Sandro Norelli, Matt Collins, Maria Barreca, Nunzio Iraci, Barbara Chirullo, Jake Yalley-Ogunro, Jack Greenhouse, Fausto Titti, Enrico Garaci, Andrea Savarino Retrovirology 2010, 7:21 (16 March 2010) The integrase strand transfer inhibitor raltegravir effectively inhibits SIV replication and combined with existing antiretroviral drugs could represent a new generation of ART capable of clearing virus from the body.
|
|
Research article
José R Hernandez Mora, Eric Rivals, Hakim Mireau, Françoise Budar BMC Plant Biology 2010, 10:35 (24 February 2010) |
|
Review
A reference guide for tree analysis and visualization Georgios A Pavlopoulos, Theodoros G Soldatos, Adriano Barbosa-Silva, Reinhard Schneider BioData Mining 2010, 3:1 (22 February 2010) |
|
Software
BLAST-EXPLORER helps you building datasets for phylogenetic analysis Alexis Dereeper, Stephane Audic, Jean-Michel Claverie, Guillaume Blanc BMC Evolutionary Biology 2010, 10:8 (12 January 2010) |
|
Software
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses Ben C Stöver, Kai F Müller BMC Bioinformatics 2010, 11:7 (5 January 2010) |
|
Research article
Crysten E Haas, Dmitry A Rodionov, Janette Kropat, Davin Malasarn, Sabeeha S Merchant, Valérie de Crécy-Lagard BMC Genomics 2009, 10:470 (12 October 2009) |
|
Research article
Brucella microti: the genome sequence of an emerging pathogen Stéphane Audic, Magali Lescot, Jean-Michel Claverie, Holger C Scholz BMC Genomics 2009, 10:352 (4 August 2009) |
|
Technical Note
ColorTree: a batch customization tool for phylogenic trees Wei-Hua Chen, Martin J Lercher BMC Research Notes 2009, 2:155 (31 July 2009) |
|
Software
PhyloExplorer: a web server to validate, explore and query phylogenetic trees Vincent Ranwez, Nicolas Clairon, Frédéric Delsuc, Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry BMC Evolutionary Biology 2009, 9:108 (18 May 2009) |
|
Research
Deborah E Stage, Thomas H Eickbush Genome Biology 2009, 10:R49 (5 May 2009) Comparative analysis of 12 Drosophila genomes reveals insights into the evolution and mechanism of integration of R1 and R2 retrotransposons. |
|
Research article
Alain Devault, Anne-Laure Bañuls BMC Evolutionary Biology 2008, 8:292 (24 October 2008) |
|
Research article
Preferred and avoided codon pairs in three domains of life Age Tats, Tanel Tenson, Maido Remm BMC Genomics 2008, 9:463 (8 October 2008) |
|
Research article
Defining a Modular Signalling Network from the Fly Interactome Anaïs Baudot, Jean-Baptiste Angelelli, Alain Guénoche, Bernard Jacq, Christine Brun BMC Systems Biology 2008, 2:45 (19 May 2008) |
|
Methodology article
Leonid Zaslavsky, Yiming Bao, Tatiana A Tatusova BMC Bioinformatics 2008, 9:237 (16 May 2008) |
|
Research
Evolution of complexity in RNA-like replicator systems Nobuto Takeuchi, Paulien Hogeweg Biology Direct 2008, 3:11 (27 March 2008) |
|
Software
Dendroscope: An interactive viewer for large phylogenetic trees Daniel H Huson, Daniel C Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp BMC Bioinformatics 2007, 8:460 (22 November 2007) |
|
Research
Florian Odronitz, Martin Kollmar Genome Biology 2007, 8:R196 (18 September 2007) The tree of eukaryotic life was reconstructed based on the analysis of 2,269 myosin motor domains from 328 organisms, confirming some accepted relationships of major taxa and resolving disputed and preliminary classifications. |
|
Methodology article
Brian J Holden, John W Pinney, Simon C Lovell, Grigoris D Amoutzias, David L Robertson BMC Bioinformatics 2007, 8:289 (6 August 2007) |
|
Software
primetv: a viewer for reconciled trees Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad BMC Bioinformatics 2007, 8:148 (7 May 2007) |
|
Methodology article
BranchClust: a phylogenetic algorithm for selecting gene families Maria S Poptsova, J Peter Gogarten BMC Bioinformatics 2007, 8:120 (10 April 2007) A new algorithm, BranchClust, automates the finding of gene families by phylogenetic methods, outperforming sequence-similarity methods in recognizing orthologs and paralogs in an unrestricted number of taxa, a task previously difficult to automate.
|