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QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

Jifeng Tang1,2, Ben Vosman1, Roeland E Voorrips1, C Gerard van der Linden1 and Jack AM Leunissen2*

Author Affiliations

1 Plant Research International, PO Box 16, 6700 AA Wageningen, The Netherlands

2 Laboratory of Bioinformatics, Wageningen University, PO Box 8128, 6700 ET Wageningen, The Netherlands

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BMC Bioinformatics 2006, 7:438 doi:10.1186/1471-2105-7-438

Published: 9 October 2006

Additional files

Additional file 1:

QualitySNP. The source code of QualitySNP; The file is unpacked by using the command "gunzip QualitySNP.tar.gz", and then use "tar -xvf QualitySNP.tar" on a Unix/Linux computer.

Format: GZ Size: 518KB Download file

Open Data

Additional file 2:

testQualitySNP. A dataset for testing QualitySNP;The file is unpacked by using the command "gunzip testQualitySNPseq.tar.gz", and then use "tar -xvf testQualitySNPseq.tar" on a Unix/Linux computer.

Format: GZ Size: 258KB Download file

Open Data

Additional file 3:

QualitySNP manual. The manual of QualitySNP

Format: PDF Size: 92KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data