BMC Bioinformatics

official impact factor 3.03

Open Access

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

Todd J Treangen* and Xavier Messeguer

BMC Bioinformatics 2006, 7:433 doi:10.1186/1471-2105-7-433

Accesses  

  • Last 30 days: 74 accesses
  • Last year: 746 accesses
  • All time: 4307 accesses

Cited by

BioMed Central: 7 citations

Research   Open Access Highly Accessed

Small variable segments constitute a major type of diversity of bacterial genomes at the species level

Fabrice Touzain, Erick Denamur, Claudine Médigue, Valérie Barbe, Meriem El Karoui, Marie-Agnès Petit Genome Biology 2010, 11:R45 (30 April 2010)

Comparison of all available genomes of three bacterial species suggests that a large part of genome diversity is contributed by short regions.

Database   Open Access

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

Hélène Chiapello, Annie Gendrault, Christophe Caron, Jérome Blum, Marie-Agnès Petit, Meriem El Karoui BMC Bioinformatics 2008, 9:498 (27 November 2008)

Software   Open Access Highly Accessed

CoCoNUT: an efficient system for the comparison and analysis of genomes

Mohamed I Abouelhoda, Stefan Kurtz, Enno Ohlebusch BMC Bioinformatics 2008, 9:476 (12 November 2008)

Research article   Open Access

Multiple genome alignment for identifying the core structure among moderately related microbial genomes

Ikuo Uchiyama BMC Genomics 2008, 9:515 (31 October 2008)

Software   Open Access Highly Accessed

Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking

Jung Soh, Paul MK Gordon, Morgan L Taschuk, Anguo Dong, Andrew C Ah-Seng, Andrei L Turinsky, Christoph W Sensen BMC Bioinformatics 2008, 9:450 (22 October 2008)

Research   Open Access Highly Accessed

The impact of the neisserial DNA uptake sequences on genome evolution and stability

Todd J Treangen, Ole Ambur, Tone Tonjum, Eduardo PC Rocha Genome Biology 2008, 9:R60 (26 March 2008)

A study of the origin and distribution of the abundant short DNA uptake sequence (DUS) in six genomes of Neisseria suggests that transformation and recombination are tightly linked in evolution and that recombination has a key role in the establishment of DUS.

Methodology article   Open Access

HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments

Hongya Zhao, Hong Yan BMC Bioinformatics 2007, 8:256 (17 July 2007)