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Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana

Cheng-Wei Yao, Ban-Dar Hsu, Bor-Sen Chen BMC Bioinformatics 2011, 12:335 (11 August 2011)

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Research  

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information

Qi Liu, Yejun Tan, Tao Huang, Guohui Ding, Zhidong Tu, Lei Liu, Yixue Li, Hongyue Dai, Lu Xie BMC Bioinformatics 2010, 11(Suppl 11):S5 (14 December 2010)

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Research article  

Transcriptional programs: Modelling higher order structure in transcriptional control

John E Reid, Sascha Ott, Lorenz Wernisch BMC Bioinformatics 2009, 10:218 (16 July 2009)

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myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks

Jamil Bacha, James S Brodie, Matthew W Loose BMC Developmental Biology 2009, 9:33 (6 June 2009)

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Methodology article  

Systematic identification of yeast cell cycle transcription factors using multiple data sources

Wei-Sheng Wu, Wen-Hsiung Li BMC Bioinformatics 2008, 9:522 (5 December 2008)

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Research article  

A systems biology approach to construct the gene regulatory network of systemic inflammation via microarray and databases mining

Bor-Sen Chen, Shih-Kuang Yang, Chung-Yu Lan, Yung-Jen Chuang BMC Medical Genomics 2008, 1:46 (30 September 2008)

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Research article  

Identifying gene regulatory modules of heat shock response in yeast

Wei-Sheng Wu, Wen-Hsiung Li BMC Genomics 2008, 9:439 (23 September 2008)

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Methodology article  

Systematic identification of cell cycle regulated transcription factors from microarray time series data

Chao Cheng, Lei M Li BMC Genomics 2008, 9:116 (3 March 2008)

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Research article  

Prioritization of gene regulatory interactions from large-scale modules in yeast

Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron BMC Bioinformatics 2008, 9:32 (22 January 2008)

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Methodology article  

A systematic approach to detecting transcription factors in response to environmental stresses

Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-Sen Chen BMC Bioinformatics 2007, 8:473 (8 December 2007)

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Methodology article  

Eigengene networks for studying the relationships between co-expression modules

Peter Langfelder, Steve Horvath BMC Systems Biology 2007, 1:54 (21 November 2007)

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Research article  

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data

Xiangdong Liu, Walter J Jessen, Siva Sivaganesan, Bruce J Aronow, Mario Medvedovic BMC Bioinformatics 2007, 8:283 (3 August 2007)

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Research article  

Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data

Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen BMC Bioinformatics 2007, 8:188 (8 June 2007)

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