Table 1

Correlation between PIDs and structural similarity score. Z: Z-Score, (Also known as SD – Score) from randomisation.

Alignment

Weight Matrix

gap pen

PID1

PID2

PID3

PID4

Z

NAS


STAMP

0.85

0.82

0.84

0.86

AMPS

BLOSUM62

10

0.79

0.76

0.77

0.80

0.84

0.82


NAS: Normalised Alignment Score, (see text for details).

Raghava and Barton BMC Bioinformatics 2006 7:415   doi:10.1186/1471-2105-7-415

Open Data