Probe set algorithms: is there a rational best bet?
-
* Corresponding author: Eric P Hoffman ehoffman@cnmcresearch.org
BMC Bioinformatics 2006, 7:395 doi:10.1186/1471-2105-7-395
Accesses
- Last 30 days: 78 accesses
- Last 365 days: 897 accesses
- All time: 8676 accesses
Cited by
BioMed Central: 14 citations
|
Jakub Mieczkowski, Magdalena E Tyburczy, Michal Dabrowski, Piotr Pokarowski BMC Bioinformatics 2010, 11:104 (24 February 2010) |
|
Hemang Parikh, Valeriya Lyssenko, Leif C Groop BMC Medical Genomics 2009, 2:72 (31 December 2009) |
|
A white-box approach to microarray probe response characterization: the BaFL pipeline Kevin J Thompson, Hrishikesh Deshmukh, Jeffrey L Solka, Jennifer W Weller BMC Bioinformatics 2009, 10:449 (29 December 2009) |
|
Novel transcriptional profile in wrist muscles from cerebral palsy patients Lucas R Smith, Eva Pontén, Yvette Hedström, Samuel R Ward, Henry G Chambers, Shankar Subramaniam, Richard L Lieber BMC Medical Genomics 2009, 2:44 (14 July 2009) |
|
Reija Autio, Sami Kilpinen, Matti Saarela, Olli Kallioniemi, Sampsa Hautaniemi, Jaakko Astola BMC Bioinformatics 2009, 10(Suppl 1):S24 (30 January 2009) |
|
Infection and genotype remodel the entire soybean transcriptome Lecong Zhou, Santiago X Mideros, Lei Bao, Regina Hanlon, Felipe D Arredondo, Sucheta Tripathy, Konstantinos Krampis, Adam Jerauld, Clive Evans, Steven K St Martin, MA Saghai Maroof, Ina Hoeschele, Anne E Dorrance, Brett M Tyler BMC Genomics 2009, 10:49 (26 January 2009) Infection of soybean by the fungal pathogen Phytophthora causes low-amplitude gene-expression changes affecting 97-99% of the genome, as detected using 648 soybean GeneChips including 72 biological replicates to produce unprecedented statistical sensitivity.
|
|
Sami Kilpinen, Reija Autio, Kalle Ojala, Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I Skotheim, Mari Björkman, John-Patrick Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi Genome Biology 2008, 9:R139 (19 September 2008) A method for the comparison of mRNA expression levels of most human genes across gene expression array experiments, and a database of the results, are presented. |
|
Siriluck Ponsuksili, Elisabeth Jonas, Eduard Murani, Chirawath Phatsara, Tiranun Srikanchai, Christina Walz, Manfred Schwerin, Karl Schellander, Klaus Wimmers BMC Genomics 2008, 9:367 (31 July 2008) |
|
Methods for evaluating gene expression from Affymetrix microarray datasets Ning Jiang, Lindsey J Leach, Xiaohua Hu, Elena Potokina, Tianye Jia, Arnis Druka, Robbie Waugh, Michael J Kearsey, Zewei W Luo BMC Bioinformatics 2008, 9:284 (17 June 2008) Comparison of the most commonly used statistical methods for assessing differential gene expression from Affymetrix microarrays on a high-quality dataset shows that PDNN is the best performer, clearly superior to the standard Affymetrix MAS5.0 method.
|
|
ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses Todd H Stokes, JT Torrance, Henry Li, May D Wang BMC Bioinformatics 2008, 9(Suppl 6):S18 (28 May 2008) |
|
Neil S Graham, Martin R Broadley, John P Hammond, Philip J White, Sean T May BMC Genomics 2007, 8:344 (1 October 2007) |
|
Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips Andrew P Harrison, Caroline E Johnston, Christine A Orengo BMC Bioinformatics 2007, 8:195 (11 June 2007) |
|
Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine Dorothy E Grice, Ilkka Reenilä, Pekka T Männistö, Andrew I Brooks, George G Smith, Greg T Golden, Joseph D Buxbaum, Wade H Berrettini BMC Genomics 2007, 8:76 (16 March 2007) |
|
Adrian Liston, Kristine Hardy, Yvonne Pittelkow, Susan R Wilson, Lydia E Makaroff, Aude M Fahrer, Christopher C Goodnow Genome Biology 2007, 8:R12 (21 January 2007) A transcription profiling study, together with genetic linkage data, provides a molecular map of the T-cell negative selection response |