A probabilistic classifier for olfactory receptor pseudogenes

doi:10.1186/1471-2105-7-393

BMC Bioinformatics

Volume 7

Viewing options:

Abstract
Full text
PDF (1.1MB)
Additional files

Associated material:

Related literature:

Articles citing this article
on BioMed Central
on Google Scholar
on ISI Web of Science
on PubMed Central
Other articles by authors
on Google Scholar

Menashe I
Aloni R
Lancet D

on PubMed

Menashe I
Aloni R
Lancet D
Related articles/pages
on Google

on Google Scholar

on PubMed

Tools:

Post to:

Methodology article

A probabilistic classifier for olfactory receptor pseudogenes

Idan Menashe , Ronny Aloni and Doron Lancet

Department of Molecular Genetics and the Crown Human Genome Center, The Weizmann Institute of Science, Rehovot 76100, Israel

author email corresponding author email

BMC Bioinformatics 2006, 7:393doi:10.1186/1471-2105-7-393


Published:	29 August 2006

Additional files

Additional file 1:

The CORP algorithm webpage. Most recent version avaliable at http://bioportal.weizmann.ac.il/HORDE/CORP/ webcite

Format: HTM Size: 3KB Download file

Additional file 2:

An excel table with the logistic regression analyses information for the 598 and 245 non-redundant set of mouse intact and human pseudogene ORs respectively as well as for the 384 human and 279 chimpanzee ORs with intact ORF. The information for the various species is given in different worksheets. Human intact gene with missense SNPs in their highly conserved positions are highlighted in orange color and the results of their inferred alleles (marked with a or b at the end of the gene ID) are also indicated. The first column gives the gene ID as appears in the HORDE database [23]. The next 60 columns indicate the tolerant (0) and intolerant (1) residues of each gene according to the SIFT matrix (Fig. 3). The three last columns give the results of the logistic regression analysis.

Format: XLS Size: 753KB Download file

This file can be viewed with: Microsoft Excel Viewer