BMC Bioinformatics

official impact factor 3.03

Open Access

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments

Daniel A Pollard, Alan M Moses, Venky N Iyer and Michael B Eisen*

BMC Bioinformatics 2006, 7:376 doi:10.1186/1471-2105-7-376

Accesses  

  • Last 30 days: 67 accesses
  • Last 365 days: 601 accesses
  • All time: 3389 accesses

Cited by

BioMed Central: 6 citations

Research article   Open Access Highly Accessed

Towards realistic benchmarks for multiple alignments of non-coding sequences

Jaebum Kim, Saurabh Sinha BMC Bioinformatics 2010, 11:54 (26 January 2010)

Research article   Open Access

Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites

Alan M Moses BMC Evolutionary Biology 2009, 9:286 (9 December 2009)

Research   Open Access Highly Accessed

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

Elizabeth A Rach, Hsiang-Yu Yuan, William H Majoros, Pavel Tomancak, Uwe Ohler Genome Biology 2009, 10:R73 (9 July 2009)

A map of transcription start sites across the Drosophila genome, providing insights into initiation patterns and spatiotemporal conditions.

Research article   Open Access Highly Accessed

How accurately is ncRNA aligned within whole-genome multiple alignments?

Adrienne X Wang, Walter L Ruzzo, Martin Tompa BMC Bioinformatics 2007, 8:417 (26 October 2007)

Research   Open Access Highly Accessed

Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools

Weichun Huang, Joseph R Nevins, Uwe Ohler Genome Biology 2007, 8:R225 (24 October 2007)

Phylogenetic simulation of promoter evolution were used to analyze functional site turnover in regulatory sequences.

Research article   Open Access

Bioinformatic identification of novel putative photoreceptor specific cis-elements

Charles G Danko, Vera A McIlvain, Maochun Qin, Barry E Knox, Arkady M Pertsov BMC Bioinformatics 2007, 8:407 (22 October 2007)