New directions in biomedical text annotation: definitions, guidelines and corpus construction
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* Corresponding author: W John Wilbur wilbur@ncbi.nlm.nih.gov
- † Equal contributors
BMC Bioinformatics 2006, 7:356 doi:10.1186/1471-2105-7-356
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BioMed Central: 12 citations
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Methodology article
Automatic categorization of diverse experimental information in the bioscience literature Ruihua Fang, Gary Schindelman, Kimberly Auken, Jolene Fernandes, Wen Chen, Xiaodong Wang, Paul Davis, Mary Tuli, Steven J Marygold, Gillian Millburn, Beverley Matthews, Haiyan Zhang, Nick Brown, William M Gelbart, Paul W Sternberg BMC Bioinformatics 2012, 13:16 (26 January 2012) |
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Research article
The BioLexicon: a large-scale terminological resource for biomedical text mining Paul Thompson, John McNaught, Simonetta Montemagni, Nicoletta Calzolari, Riccardo del Gratta, Vivian Lee, Simone Marchi, Monica Monachini, Piotr Pezik, Valeria Quochi, CJ Rupp, Yutaka Sasaki, Giulia Venturi, Dietrich Rebholz-Schuhmann, Sophia Ananiadou BMC Bioinformatics 2011, 12:397 (12 October 2011) |
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Research article
Enriching a biomedical event corpus with meta-knowledge annotation Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou BMC Bioinformatics 2011, 12:393 (10 October 2011) An annotation scheme for meta-knowledge enrichment of biomedical event corpora achieves high levels of inter-annotator agreement when applied to the GENIA event corpus, and facilitates more sophisticated training of information extraction systems.
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Research
Xinglong Wang, Rafal Rak, Angelo Restificar, Chikashi Nobata, CJ Rupp, Riza Theresa B Batista-Navarro, Raheel Nawaz, Sophia Ananiadou BMC Bioinformatics 2011, 12(Suppl 8):S11 (3 October 2011) |
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Research article
The biomedical discourse relation bank Rashmi Prasad, Susan McRoy, Nadya Frid, Aravind Joshi, Hong Yu BMC Bioinformatics 2011, 12:188 (23 May 2011) |
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Research
BioDEAL: community generation of biological annotations Paul Breimyer, Nathan Green, Vinay Kumar, Nagiza F Samatova BMC Medical Informatics and Decision Making 2009, 9(Suppl 1):S5 (3 November 2009) |
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Research article
Construction of an annotated corpus to support biomedical information extraction Paul Thompson, Syed A Iqbal, John McNaught, Sophia Ananiadou BMC Bioinformatics 2009, 10:349 (23 October 2009) |
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Proceedings
Evaluation of a large-scale biomedical data annotation initiative Ronilda Lacson, Erik Pitzer, Christian Hinske, Pedro Galante, Lucila Ohno-Machado BMC Bioinformatics 2009, 10(Suppl 9):S10 (17 September 2009) |
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Research
Halil Kilicoglu, Sabine Bergler BMC Bioinformatics 2008, 9(Suppl 11):S10 (19 November 2008) |
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Software
BibGlimpse: The case for a light-weight reprint manager in distributed literature research Thomas Tüchler, Golda Velez, Alexandra Graf, David P Kreil BMC Bioinformatics 2008, 9:406 (1 October 2008) |
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Proceedings
Comparative analysis of five protein-protein interaction corpora Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski BMC Bioinformatics 2008, 9(Suppl 3):S6 (11 April 2008) |
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Research article
Corpus annotation for mining biomedical events from literature Jin-Dong Kim, Tomoko Ohta, Jun'ichi Tsujii BMC Bioinformatics 2008, 9:10 (8 January 2008) A new semantic enrichment technique that highlights biomedical events in the literature has been used to produce a large, high-quality annotated corpus, which will be valuable for Natural Language Processing-based text mining.
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