Table 3 |
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|
TextPresso-predicted and manually curated Brucella genetic interactions. One match means one highlighted sentence containing at least 2 genes and at least one word under "association" or "regulation" category. Each match represents for one predicted genetic interaction. The results are shown by manually verified vs. TextPresso-predicted interactions. The number of verified vs. predicted interactions varies depending on the numbers (#) of matches and papers to use as the cutoffs and whether or not to use full text contents besides paper abstracts. |
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|
Abstract |
Full text (containing abstract) |
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|
|
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|
# of papers |
# of matches |
# of papers |
# of matches |
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|
|
|
|||||||||||||
|
1 |
2 |
3 |
4 |
5 |
10 |
1 |
2 |
3 |
4 |
5 |
10 |
20 |
||
|
|
||||||||||||||
|
1 |
17/38 |
6/10 |
1/1 |
1/1 |
1/1 |
0/0 |
1 |
58/1330 |
50/213 |
42/105 |
34/81 |
31/63 |
16/26 |
6/7 |
|
2 |
3/5 |
3/5 |
1/1 |
1/1 |
1/1 |
0/0 |
2 |
46/172 |
46/172 |
41/94 |
34/73 |
31/55 |
16/26 |
6/7 |
|
3 |
1/1 |
1/1 |
1/1 |
1/1 |
1/1 |
0/0 |
3 |
33/71 |
33/71 |
33/71 |
30/60 |
28/45 |
15/24 |
6/7 |
|
4 |
1/1 |
1/1 |
1/1 |
1/1 |
1/1 |
0/0 |
4 |
28/50 |
28/50 |
28/50 |
28/50 |
27/40 |
15/23 |
6/7 |
|
8 |
0/0 |
0/0 |
0/0 |
0/0 |
0/0 |
0/0 |
8 |
8/10 |
8/10 |
8/10 |
8/10 |
8/10 |
8/10 |
6/7 |
|
|
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|
Xiang et al. BMC Bioinformatics 2006 7:347 doi:10.1186/1471-2105-7-347 |
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