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Open Access Methodology article

Structure alignment based on coding of local geometric measures

Peter L Chang, Andrew W Rinne and T Gregory Dewey*

Author Affiliations

Keck Graduate Institute of Applied Life Sciences, Claremont, CA, USA

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BMC Bioinformatics 2006, 7:346  doi:10.1186/1471-2105-7-346

Published: 14 July 2006

Additional files

Additional File 1:

Comparison of topological alignments for different window sizes for a group of "difficult" proteins.

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Additional File 2:

Comparison of different alignment methods for "difficult" proteins.

Format: DOC Size: 18KB Download file

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Additional File 3:

Comparison of the effect on window size (TLOCAL) and alignment method on alignment scores for hinged proteins.

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Additional File 4:

Multiple sequence alignment of the kinase superfamily - Comparison of topological MSA with hand MSA

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Open Data