Comparison of matched orientations (pair 8). Comparison of matched orientations from MatchMaker (default settings) and CE  (web server  with default settings). Each matched structure [PDB:4fgf] is rainbow-colored from blue at the N-terminus to red at the C-terminus. The reference structure [PDB:1tie] is shown in tan on the right.
Meng et al. BMC Bioinformatics 2006 7:339 doi:10.1186/1471-2105-7-339